PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06009.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 241aa    MW: 27105.3 Da    PI: 4.7734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06009.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1980129255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+G+r ++ +g+W++eIrdp     + +r++lg+f taeeAa a++ a+k+++g
  Rsa1.0_06009.1_g00002.1  80 VYRGIRKRP-WGKWASEIRDPE----KgARVWLGTFNTAEEAAMAYDVAAKRIRG 129
                              69*******.**********73....24************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.53880137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3180138IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2280138IPR016177DNA-binding domain
SMARTSM003802.8E-3580143IPR001471AP2/ERF domain
PfamPF008475.7E-1380129IPR001471AP2/ERF domain
CDDcd000188.03E-3281138No hitNo description
PRINTSPR003671.2E-118192IPR001471AP2/ERF domain
PRINTSPR003671.2E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MCGGAVISDF APSVTRAKSR KLTAEELWSE LDASACDDFW GFDSTFKLLP TKQQVTLKDE  60
AADKEKEPAA TEKRKERKNV YRGIRKRPWG KWASEIRDPE KGARVWLGTF NTAEEAAMAY  120
DVAAKRIRGD KAKLNFSDIL HNPPPAIPTL PRPDNQPPVK KLCVSSQSEL TQSSFPGECI  180
EFGNGDEFRN MSYGYDLKQQ ISSLEYFFEL DGTTPEQPSQ LHETGSEVDL WTLDDVIASY  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2281136359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17387RKERKNVYRGIRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893170.0AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651600.11e-156PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427361e-120RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078CZS91e-157A0A078CZS9_BRANA; BnaA03g34290D protein
STRINGBra001640.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-105ethylene-responsive element binding protein